PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 138aa    MW: 15903.5 Da    PI: 10.4844
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729950genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.81.9e-15899295
                  HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX..XXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg..kkelle 95
                  F +kly+i++d++ + ++sw+  +n++sf+v+d ++f++++L+k     ++++ F+ QL   gF+ + +  ++        eF+h+ F kg  kk++++
     676729950  8 FYMKLYQIVDDPSSDAIVSWNksNNQSSFIVWDLKRFQREILSKsSVMGRSLKEFMSQLRNRGFQVIVKGPGE-------LEFSHDDFAKGllKKTMVK 99
                  999******************6445599**************773677889*****************99998.......********99833334444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-17391IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-11499IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-13591IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-5831IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-12892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-56274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MESSSSSFYM KLYQIVDDPS SDAIVSWNKS NNQSSFIVWD LKRFQREILS KSSVMGRSLK  60
EFMSQLRNRG FQVIVKGPGE LEFSHDDFAK GLLKKTMVKE LSQRIQKLDD QVKAMKCRIK  120
AKKAAVKVDS LFQNLRIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745665.14e-61PREDICTED: heat shock factor protein HSF8-like
TrEMBLM4EA011e-60M4EA01_BRARP; Uncharacterized protein
STRINGBra025608.1-P3e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.11e-26Winged helix-turn-helix transcription repressor DNA-binding